Target database are a key component of a standalone BLAST setup. A common set of pre-formatted NCBI BLAST databases is available from NCBI. NCBI BLAST DB Downloader is a a freeware tool that automates the NCBI BLAST DB download process. It automatically downloads and unpacks the selected NCBI Blast databases from NCBI ftp server.
Note: Databases can also be prepared de novo from custom FASTA sequences locally using our Database Builder utility.
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